PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39997
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 1500aa    MW: 168459 Da    PI: 8.2087
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39997genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.001113831408123
                                 EEET..TTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                                 ++C    C++sF +k +L +H r+ +
  Tp57577_TGAC_v2_mRNA39997 1383 HQCDieGCTMSFESKQELLHHKRNvC 1408
                                 789999****************9877 PP

2zf-C2H213.40.0002214071430223
                                 EET..TTTEEESSHHHHHHHHHHT CS
                    zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                                 +Cp   Cgk F ++ +L++H r+H
  Tp57577_TGAC_v2_mRNA39997 1407 VCPvkGCGKKFFSHKYLVQHRRVH 1430
                                 69999*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005452.6E-151960IPR003349JmjN domain
PROSITE profilePS5118314.5892061IPR003349JmjN domain
PfamPF023752.3E-132154IPR003349JmjN domain
PROSITE profilePS5118433.006179348IPR003347JmjC domain
SMARTSM005581.4E-48179348IPR003347JmjC domain
SuperFamilySSF511975.22E-25193362No hitNo description
PfamPF023731.7E-35212331IPR003347JmjC domain
Gene3DG3DSA:3.30.160.608.3E-413751405IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551013831405IPR015880Zinc finger, C2H2-like
SMARTSM003550.003714061430IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.61214061435IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.7E-614071434IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014081430IPR007087Zinc finger, C2H2
SuperFamilySSF576673.32E-914221464No hitNo description
Gene3DG3DSA:3.30.160.603.6E-814351460IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.55414361465IPR007087Zinc finger, C2H2
SMARTSM003550.001614361460IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014381460IPR007087Zinc finger, C2H2
SuperFamilySSF576675.03E-814541488No hitNo description
Gene3DG3DSA:3.30.160.606.0E-914611488IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.214661492IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.76214661497IPR007087Zinc finger, C2H2
PROSITE patternPS00028014681492IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1500 aa     Download sequence    Send to blast
MALSESNADV FPWLKSMPVA PEYRPTPAEF EDPIGYIFKI EKEASKYGIC KIIPPFPPSP  60
KKTAIANLNR SLPNSTFTTR QQQIGFCPRK SRPVKRPVWQ SGDHYTFTEF EAKAKWFEKS  120
YLKKHSKKKG NGGGALEMET LFWKATVDKP FSVEYANDMP GSAFSMSSSK FRHSGESASV  180
AHSAWNMRGV SRAKGSLLRF MKEEIPGVTS PMVYLAMLFS WFAWHVEDHD LHSLNYLHMG  240
ASKTWYGVPR DAAVAFEDVV RVHGYGGEIN PLVTFSILGE KTTVMSPEVF ISAGVPCCRL  300
VQNAGEFVVT FPRAYHTGFS HGFNCGEAAN IATPEWLRVA KDAAIRRASI NYPPMVSHFQ  360
LLYDLALALC SRVPGGISAG PRSSRLKDKK KGEGDSVVKE LFVQDVLRNN DLLHVLGKES  420
SVVLLPRSSV DISICSKLRV GCRQQKVNPG FSINVCNSEG MNSSKGFVSD DLVFNRNCGI  480
VQEKNSHSVK GEFNLLSEGK GISPFDANSN TSPSSSKQLH RGKESETSQG DGLSDQRLFS  540
CVTCGLLNFS CVAIVRPSEP AARYLMSANC SFFNDWVVGS GVPSNKFTVA GEDENIPEPN  600
IHTEWTEKNA QVEALNTEGG NANTALALLA SAYGNSSDSE EDAVDNHESN TIHSTSESLP  660
SNVQVSHDNP MTRHDKDDIL SESTSYKAHG FEGNLSQPCD QSLEDQDYKT TSGVALENTR  720
QMPYSTTYSS QDANNAEKSL SVEAMVAVNH KNALLVPQCD EDSSRMHVFC LEHAVDAEQQ  780
LRPIGGAHIL LLCHPDYPKI EAEAKLVAED LGIDYMWKNI AYRHGTKEDE ERIQLAVDSE  840
EAIPGNGDWA VKLGINLFYS ANLSRSPLYS KQMPYNSVIY YAFGRSTQAS SPIEPKVYQR  900
RSDKHKKVVA GKWCGKVWMS NQVHPLLAKR DSEDVEDEKS LHGLVLPNVK IEASGNNSAE  960
DKPNPRPRRI VKQARGVEKD GAAESDLVSD DSLDDDYRMR RMSFNVKKAK FIDNDAVSDD  1020
AMDLDSDCHQ MGELRSKQVE YTERDSISED SLDVGSLQHR KTSRNKHANC IIEDAISDDQ  1080
MENGCQMQQN RIPKKRQGKS LAEKDSVISD DQLELNMQKQ WRSNSRSRKA KYLTEEDSVS  1140
DNQANVYCRK YQRRTVKVRQ ARCVVGEDLM SDDQLKDPFL NQKPSISRRK NKVIDREVKN  1200
EMSDDQLDDH FQKQQKKIPK GRRHTKQTDE EVIDDSAEDD MSLNNEMEDD SLQQYKRTHP  1260
TKQSKPKTLR QMKQSKSLQI KNQTPKPVKR GVGLRMKSKA AQQVKQPSRL RSKQSGSSRE  1320
PSLDMEEEEE GGPSTRLRKR VQKAQESEVK STEKQTKRKS AKDVTATKVS ARDPKTEDEE  1380
AEHQCDIEGC TMSFESKQEL LHHKRNVCPV KGCGKKFFSH KYLVQHRRVH EDDRPLKCPW  1440
KGCKMSFKWA WARTEHIRVH TGVRPYACAE PGCGQTFRFV SDFSRHKRKT GHLAKKIRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fwj_A1e-50183667351HISTONE DEMETHYLASE JARID1C
5fwj_B1e-50183667351HISTONE DEMETHYLASE JARID1C
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2357530.0AC235753.2 Medicago truncatula clone mth2-128c9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460954.10.0lysine-specific demethylase REF6-like protein, putative
SwissprotQ9STM30.0REF6_ARATH; Lysine-specific demethylase REF6
TrEMBLA0A072V0U60.0A0A072V0U6_MEDTR; Lysine-specific demethylase REF6-like protein, putative
STRINGGLYMA04G36620.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56483250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6